Nonhuman Primate Genetics and Genomics Working Group Publications
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The Macaque Genotype And Phenotype Resource (mGAP)
National Nonhuman Primate DNA Bank
BALDR – BCR Assignment of Lineage by De novo Reconstruction
Ancestry Informative Marker and Genetic Management Panels for Rhesus Macaque
Genetic Management of Nonhuman Primate Colonies
2020
Cole SA, Laviada-Molina HA, Serres-Perales JM, Rodriguez-Ayala E, Bastarrachea RA
The
COVID-19 Pandemic during the Time of the Diabetes Pandemic: Likely Fraternal Twins?
Pathogens.
2020 May 19;9(5). pii: pathogens9050389. doi:10.3390/pathogens9050389. 2020.
Johnson AL, Peterson SM, Terry MML, Ferguson B, Colgin LM, Lewis AD
Spontaneous
KRT5 Gene Mutation in Rhesus Macaques (Macaca mulatta): A NovelNonhuman Primate Model of Epidermolysis Bullosa
Simplex.
Vet Pathol. 2020 Feb 25:300985819900354. doi: 10.1177/0300985819900354. 2020.
Mavigner M, Habib J, Deleage C, Rosen E, Mattingly C, Bricker K,
Kashuba A, Amblard F, Schinazi RF, Lawson B, Vanderford TH, Jean S,
Cohen J, McGary C, Paiardini M, Wood MP, Sodora DL, Silvestri G, Estes
J, Chahroudi A
Correction
for Mavigner et al., 'Simian Immunodeficiency Virus Persistence inCellular and Anatomic Reservoirs in
Antiretroviral Therapy-Suppressed Infant Rhesus Macaques'.
J Virol. 2020 Mar 31;94(8). pii:
94/8/e01742-19. doi: 10.1128/JVI.01742-19. Print2020 Mar 31. 2020.
Raper J, Kovacs-Balint Z, Mavigner M, Gumber S, Burke MW, Habib J,
Mattingly C, Fair D, Earl E, Feczko E, Styner M, Jean SM, Cohen JK,
Suthar MS, Sanchez MM, Alvarado MC, Chahroudi A
Long-term
alterations in brain and behavior after postnatal Zika virus infection in infant macaques.
Nat
Commun. 2020 May 21;11(1):2534. doi: 10.1038/s41467-020-16320-7. 2020.
Shortreed CG, Wiseman RW, Karl JA, Bussan HE, Baker DA, Prall TM, Haj AK, Moreno GK, Penedo MCT, O'Connor
DH
Characterization
of 100 extended major histocompatibility complex haplotypes inIndonesian cynomolgus macaques.
Immunogenetics. 2020 Feb 29. pii: 10.1007/s00251-020-01159-5. doi:10.1007/s00251-020-01159-5. 2020.
Zhang X, Hutchins SD, Blough BE, Vallender EJ
In
Vitro Effects of Ligand Bias on Primate Mu Opioid Receptor DownstreamSignaling.
Int J Mol Sci.
2020 Jun 3;21(11). pii: ijms21113999. doi: 10.3390/ijms21113999. 2020.
2019
Abbott DH, Rogers J, Dumesic DA, Levine JE
Naturally
Occurring and Experimentally Induced Rhesus Macaque Models forPolycystic Ovary Syndrome: Translational Gateways
to Clinical Application.
Med Sci (Basel). 2019 Nov 27;7(12). pii: medsci7120107.
doi:10.3390/medsci7120107. 2019.
Ackerley CG, Billingsley JM, Tharp G, Amancha PK, Tangpricha V, Smith SA, Amara R, Bosinger S, Kelley
C
Transgender
Women on Feminizing Hormone Therapy Demonstrate a Distinct RectalMucosal Transcriptome from Cisgender Men.
AIDS Res Hum Retroviruses. 2020 Jul 1. doi: 10.1089/AID.2020.0061. 2020.
Aid M, Ram DR, Bosinger SE, Barouch DH, Reeves RK
Delineation
and Modulation of the Natural Killer Cell Transcriptome in RhesusMacaques During ZIKV and SIV Infections.
Front Cell Infect Microbiol. 2020 Apr 29;10:194. doi: 10.3389/fcimb.2020.00194.eCollection 2020.
2020.
Bimber BN, Yan MY, Peterson SM, Ferguson B
mGAP: the
macaque genotype and phenotype resource, a framework for accessing and interpreting macaque variant data, and
identifying new models of human disease.
BMC Genomics. 2019 Mar 6;20(1):176. doi:
10.1186/s12864-019-5559-7. 2019.
Brown CJ, Mtui D, Oswald BP, Van Leuven JT, Vallender EJ, Schultz-Darken N, Ross CN, Tardif SD, Austad SN, Forney
LJ
Comparative
genomics of Bifidobacterium species isolated from marmosets andhumans.
Am J Primatol. 2019 May
6:e983. doi: 10.1002/ajp.22983. 2019.
Carbone L, Davis BA, Fei SS, White A, Nevonen KA, Takahashi D, Vinson A, True C, Roberts CT Jr, Varlamov
O
Synergistic
Effects of Hyperandrogenemia and Obesogenic Western-style Diet onTranscription and DNA Methylation in Visceral
Adipose Tissue of Nonhuman Primates.
Sci Rep. 2019 Dec 17;9(1):19232. doi:
10.1038/s41598-019-55291-8. 2019.
Caskey JR, Wiseman RW, Karl JA, Baker DA, Lee T, Maddox RJ, Raveendran M, Harris RA, Hu J, Muzny DM, Rogers J,
O'Connor DH
MHC
genotyping from rhesus macaque exome sequences.
Immunogenetics. 2019 Sep;71(8-9):531-544. doi:
10.1007/s00251-019-01125-w. Epub2019 Jul 18. 2019.
Cirelli KM, Carnathan DG, Nogal B, Martin JT, Rodriguez OL,
Upadhyay AA, Enemuo CA, Gebru EH, Choe Y, Viviano F, Nakao C, Pauthner
MG, Reiss S, Cottrell CA, Smith ML, Bastidas R, Gibson W, Wolabaugh AN,
Melo MB, Cossette B, Kumar V, Patel NB, Tokatlian T, Menis S, Kulp DW,
Burton DR, Murrell B, Schief WR, Bosinger SE, Ward AB, Watson CT,
Silvestri G, Irvine DJ, Crotty S
Slow
Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal CenterResponses via Modulation of
Immunodominance.
Cell. 2019 May 16;177(5):1153-1171.e28. doi: 10.1016/j.cell.2019.04.012.
Epub2019 May 9. 2019.
Cordy RJ, Patrapuvich R, Lili LN, Cabrera-Mora M, Chien JT, Tharp
GK, Khadka M, Meyer EV, Lapp SA, Joyner CJ, Garcia A, Banton S, Tran V,
Luvira V, Rungin S, Saeseu T, Rachaphaew N, Pakala SB, DeBarry JD,
Kissinger JC, Ortlund EA, Bosinger SE, Barnwell JW, Jones DP, Uppal K,
Li S, Sattabongkot J, Moreno A, Galinski MR
Distinct
amino acid and lipid perturbations characterize acute versus chronicmalaria.
JCI Insight. 2019
May 2;4(9). pii: 125156. doi: 10.1172/jci.insight.125156.eCollection 2019 May 2. 2019.
Cuzon Carlson VC, Ford MM, Carlson TL, Lomniczi A, Grant KA, Ferguson B, Cervera-Juanes RP
Modulation
of Gpr39, a G-protein coupled receptor associated with alcohol use in
non-human primates, curbs ethanol intake in mice.
Neuropsychopharmacology. 2019
May;44(6):1103-1113. doi:10.1038/s41386-018-0308-1. Epub 2019 Jan 5. 2019.
Ezzelarab MB, Perez-Gutierrez A, Humar A, Wijkstrom M, Zahorchak AF, Lu-Casto L, Wang YC, Wiseman RW, Minervini M,
Thomson AW
Preliminary
assessment of the feasibility of autologous myeloid-derivedsuppressor
cell infusion in non-human primate kidney transplantation.
Transpl Immunol. 2019 Oct;56:101225.
doi: 10.1016/j.trim.2019.101225. Epub 2019Jul 19. 2019.
Hagan T, Cortese M, Rouphael N, Boudreau C, Linde C, Maddur MS,
Das J, Wang H, Guthmiller J, Zheng NY, Huang M, Uphadhyay AA, Gardinassi
L, Petitdemange C, McCullough MP, Johnson SJ, Gill K, Cervasi B, Zou J,
Bretin A, Hahn M, Gewirtz AT, Bosinger SE, Wilson PC, Li S, Alter G,
Khurana S, Golding H, Pulendran B
Antibiotics-Driven Gut Microbiome Perturbation Alters Immunity to Vaccines inHumans.
Cell. 2019 Sep 5;178(6):1313-1328.e13. doi: 10.1016/j.cell.2019.08.010. 2019.
Haj AK, Arbanas JM, Yamniuk AP, Karl JA, Bussan HE, Drinkwater KY,
Graham ME, Ericsen AJ, Prall TM, Moore K, Cheng L, Gao M, Graziano RF,
Loffredo JT, Wiseman RW, O'Connor DH
Characterization of Mauritian Cynomolgus Macaque FcgammaR Alleles Using Long-ReadSequencing.
J Immunol. 2019 Jan 1;202(1):151-159. doi: 10.4049/jimmunol.1800843. Epub 2018Dec 10. 2019.
Kanthaswamy S, Oldt RF, Montes M, Falak A
Comparing
two commercial domestic dog (Canis familiaris) STR genotyping kits for
forensic identity calculations in a mixed-breed dog population sample.
Anim Genet. 2019
Feb;50(1):105-111. doi: 10.1111/age.12758. Epub 2018 Dec 28. 2019.
Kanthaswamy S, Oldt RF, Said R, Grijalva J, Falak A, Jensen A, Vizor C, Houghton P, Bunlungsup S, Malaivijitnond
S, Smith DG
Partial
sequence analyses of exon 7 of the ABO locus of cynomolgus
(Macacafascicularis) and rhesus (M. mulatta) macaques: Indeterminate
phenotypes show the presence of the O blood group.
HLA. 2019 Aug 25. doi: 10.1111/tan.13675.
2019.
Keller MJ, Wood L, Billingsley JM, Ray LL, Goymer J, Sinclair S,
McGinn AP, Marzinke MA, Frank B, Srinivasan S, Liu C, Atrio JM, Espinoza
L, Mugo N, Spiegel HML, Anderson PL, Fredricks DN, Hendrix CW, Marrazzo
J, Bosinger SE, Herold BC
Tenofovir
disoproxil fumarate intravaginal ring for HIV pre-exposure prophylaxis
in sexually active women: a phase 1, single-blind, randomised,
controlled trial.
Lancet HIV. 2019 Aug;6(8):e498-e508. doi: 10.1016/S2352-3018(19)30145-6.
Epub2019 Jul 15. 2019.
Leung ET, Raboin MJ, McKelvey J, Graham A, Lewis A, Prongay K, Cohen AM, Vinson A
Modelling disease risk for amyloid A (AA)
amyloidosis in non-human primates usingmachine learning.
Amyloid. 2019 Sep;26(3):139-147. doi:
10.1080/13506129.2019.1625038. Epub 2019Jun 18. 2019.
Mavigner M, Habib J, Deleage C, Rosen E, Mattingly C, Bricker K,
Kashuba A, Amblard F, Schinazi RF, Lawson B, Vanderford TH, Jean S,
Cohen J, McGary C, Paiardini M, Wood MP, Sodora DL, Silvestri G, Estes
J, Chahroudi A
Correction
for Mavigner et al., 'Simian Immunodeficiency Virus Persistence
inCellular and Anatomic Reservoirs in Antiretroviral Therapy-Suppressed
Infant Rhesus Macaques'.
J Virol. 2019 Jan 17;93(3). pii: 93/3/e01814-18. doi:
10.1128/JVI.01814-18. Print2019 Feb 1. 2019.
Mavigner M, Zanoni M, Tharp GK, Habib J, Mattingly CR, Lichterfeld M, Nega MT, Vanderford TH, Bosinger SE,
Chahroudi A
Pharmacological
modulation of the Wnt/beta-catenin pathway inhibits proliferationand
promotes differentiation of long-lived memory CD4(+) T-cells in
ART-suppressed SIV-infected macaques.
J Virol. 2019 Oct 16. pii: JVI.01094-19. doi:
10.1128/JVI.01094-19. 2019.
McBrien JB, Mavigner M, Franchitti L, Smith SA, White E, Tharp GK,
Walum H, Busman-Sahay K, Aguilera-Sandoval CR, Thayer WO, Spagnuolo RA,
Kovarova M, Wahl A, Cervasi B, Margolis DM, Vanderford TH, Carnathan
DG, Paiardini M, Lifson JD, Lee JH, Safrit JT, Bosinger SE, Estes JD,
Derdeyn CA, Garcia JV, Kulpa DA, Chahroudi A, Silvestri G
Author Correction: Robust and persistent
reactivation of SIV and HIV by N-803 anddepletion of CD8(+) cells.
Nature. 2020 Feb 4. pii:
10.1038/s41586-020-2002-9. doi:10.1038/s41586-020-2002-9. 2020.
McBrien JB, Mavigner M, Franchitti L, Smith SA, White E, Tharp GK,
Walum H, Busman-Suhay K, Aguilera-Sandoval CR, Thayer WO, Spagnuolo RA,
Kovarova M, Wahl A, Cervasi B, Margolis DM, Vanderford TH, Carnathan
DG, Paiardini M, Lifson JD, Lee JH, Safrit JT, Bosinger SE, Estes JD,
Derdeyn CA, Garcia JV, Kulpa DA, Chahroudi A, Silvestri G
Robust and persistent reactivation of SIV
and HIV by N-803 and depletion ofCD8(+) cells.
Nature. 2020 Jan 22. pii:
10.1038/s41586-020-1946-0. doi:10.1038/s41586-020-1946-0. 2020.
Moshiri A, Chen R, Kim S, Harris RA, Li Y, Raveendran M, Davis S,
Liang Q, Pomerantz O, Wang J, Garzel L, Cameron A, Yiu G, Stout JT,
Huang Y, Murphy CJ, Roberts J, Gopalakrishna KN, Boyd K, Artemyev NO,
Rogers J, Thomasy SM
A nonhuman
primate model of inherited retinal disease.
J Clin Invest. 2019 Feb 1;129(2):863-874. doi:
10.1172/JCI123980. Epub 2019 Jan22. 2019.
Nixon CC, Mavigner M, Sampey GC, Brooks AD, Spagnuolo RA, Irlbeck
DM, Mattingly C, Ho PT, Schoof N, Cammon CG, Tharp GK, Kanke M, Wang Z,
Cleary RA, Upadhyay AA, De C, Wills SR, Falcinelli SD, Galardi C, Walum
H, Schramm NJ, Deutsch J, Lifson JD, Fennessey CM, Keele BF, Jean S,
Maguire S, Liao B, Browne EP, Ferris RG, Brehm JH, Favre D, Vanderford
TH, Bosinger SE, Jones CD, Routy JP, Archin NM, Margolis DM, Wahl A,
Dunham RM, Silvestri G, Chahroudi A, Garcia JV
Systemic HIV and SIV latency reversal via non-canonical NF-kappaB signalling invivo.
Nature. 2020 Jan 22. pii: 10.1038/s41586-020-1951-3. doi:10.1038/s41586-020-1951-3. 2020.
O'Neal JT, Upadhyay AA, Wolabaugh A, Patel NB, Bosinger SE, Suthar MS
West
Nile Virus-Inclusive Single-Cell RNA Sequencing Reveals Heterogeneity
in theType I Interferon Response within Single Cells.
J Virol. 2019 Mar 5;93(6). pii:
JVI.01778-18. doi: 10.1128/JVI.01778-18. Print2019 Mar 15. 2019.
Oldt RF, Kanthaswamy S, Montes M, Schumann L, Grijalva J, Bunlungsup S, Houghton P, Smith DG, Malaivijitnond
S
Population genetics of the ABO
locus within the rhesus (Macaca mulatta) andcynomolgus (M. fascicularis) macaque hybrid zone.
Int J Immunogenet. 2019 Feb;46(1):38-48. doi: 10.1111/iji.12405. Epub 2018 Nov 2. 2019.
Oldt RF, Kanthaswamy S
Expanded
CODIS STR allele frequencies - Evidence for the irrelevance ofrace-based DNA databases.
Leg Med
(Tokyo). 2019 Nov 16;42:101642. doi: 10.1016/j.legalmed.2019.101642. 2019.
Peterson SM, McGill TJ, Puthussery T, Stoddard J, Renner L, Lewis
AD, Colgin LMA, Gayet J, Wang X, Prongay K, Cullin C, Dozier B, Ferguson
B, Neuringer M
Bardet-Biedl
Syndrome in rhesus macaques: A nonhuman primate model of retinitispigmentosa.
Exp Eye Res. 2019
Oct 4:107825. doi: 10.1016/j.exer.2019.107825. 2019.
Pu XA, Young AP, Kubisch HM
Production of Transgenic Mice by Pronuclear Microinjection.
Methods Mol Biol.
2019;1874:17-41. doi: 10.1007/978-1-4939-8831-0_2. 2019.
Raboin MJ, Letaw J, Mitchell AD, Toffey D, McKelvey J, Roberts CT Jr, Curran JE, Vinson A
Genetic Architecture of Human Obesity
Traits in the Rhesus Macaque.
Obesity (Silver Spring). 2019 Mar;27(3):479-488. doi:
10.1002/oby.22392. Epub2019 Feb 11. 2019.
Robinson JA, Belsare S, Birnbaum S, Newman DE, Chan J, Glenn JP, Ferguson B, Cox LA, Wall JD
Analysis of 100 high-coverage genomes from
a pedigreed captive baboon colony.
Genome Res. 2019 May;29(5):848-856. doi:
10.1101/gr.247122.118. Epub 2019 Mar 29. 2019.
Rodriguez Stewart RM, Berry JTL, Berger AK, Yoon SB, Hirsch AL, Guberman JA, Patel NB, Tharp GK, Bosinger SE,
Mainou BA
Enhanced Killing of
Triple-Negative Breast Cancer Cells by Reassortant Reovirusand Topoisomerase Inhibitors.
J
Virol. 2019 Sep 11. pii: JVI.01411-19. doi: 10.1128/JVI.01411-19. 2019.
Rogers J, Raveendran M, Harris RA, Mailund T, Leppala K,
Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK,
Jordan V, Steely CJ, Beckstrom TO, Bergey C, Burrell A, Schrempf D, Noll
A, Kothe M, Kopp GH, Liu Y, Murali S, Billis K, Martin FJ, Muffato M,
Cox L, Else J, Disotell T, Muzny DM, Phillips-Conroy J, Aken B, Eichler
EE, Marques-Bonet T, Kosiol C, Batzer MA, Hahn MW, Tung J, Zinner D,
Roos C, Jolly CJ, Gibbs RA, Worley KC
The comparative genomics and complex population history of Papio baboons.
Sci Adv.
2019 Jan 30;5(1):eaau6947. doi: 10.1126/sciadv.aau6947. eCollection 2019Jan. 2019.
Shytaj IL, Lucic B, Forcato M, Penzo C, Billingsley J, Laketa V,
Bosinger S, Stanic M, Gregoretti F, Antonelli L, Oliva G, Frese CK,
Trifunovic A, Galy B, Eibl C, Silvestri G, Bicciato S, Savarino A, Lusic
M
Alterations of redox and iron
metabolism accompany the development of HIVlatency.
EMBO J. 2020 Mar 11:e102209. doi:
10.15252/embj.2019102209. 2020.
Vallender EJ
Genetics of human
brain evolution.
Prog Brain Res. 2019;250:3-39. doi: 10.1016/bs.pbr.2019.01.003. Epub 2019 Feb
26. 2019.
Yan MY, Ferguson B, Bimber BN
VariantQC: a visual quality control report for variant evaluation.
Bioinformatics.
2019 Jul 16. pii: 5532508. doi: 10.1093/bioinformatics/btz560. 2019.
Zhang X, Yasuda K, Gilmore RA, Westmoreland SV, Platt DM, Miller GM, Vallender EJ
Alcohol-induced changes in the gut
microbiome and metabolome of rhesus macaques.
Psychopharmacology (Berl). 2019
May;236(5):1531-1544. doi:10.1007/s00213-019-05217-z. Epub 2019 Mar 22. 2019.
2018
Aliota MT, Dudley DM, Newman CM, Weger-Lucarelli J, Stewart LM,
Koenig MR, Breitbach ME, Weiler AM, Semler MR, Barry GL, Zarbock KR, Haj
AK, Moriarty RV, Mohns MS, Mohr EL, Venturi V, Schultz-Darken N,
Peterson E, Newton W, Schotzko ML, Simmons HA, Mejia A, Hayes JM,
Capuano S, Davenport MP, Friedrich TC, Ebel GD, O'Connor SL, O'Connor DH
Molecularly barcoded Zika virus libraries
to probe in vivo evolutionary dynamics.
PLoS Pathog. 2018 Mar; 14(3): e1006964.
Banerjee P, Ries M, Janaka SK, Grandea AG, Wiseman R, O'Connor DH, Golos TG, Evans DT
Diversification
of Bw4 Specificity and Recognition of a Nonclassical MHC Class I
Molecule Implicated in Maternal-Fetal Tolerance by Killer Cell Ig-like
Receptors of the Rhesus Macaque.
Journal of immunology (Baltimore, Md. : 1950) 2018 Nov; 201(9):
2776-2786.
Bosinger SE, Tharp GK, Patel NB, Zhao C, Payne TL, Dietz
Ostergaard S, Butler K, Ellis S, Johnson RL, Kersh EN, McNicholl JM,
Vishwanathan SA
Progestin-based
contraception regimens modulate expression of putative HIV risk factors
in the vaginal epithelium of pig-tailed Macaques.
Am. J. Reprod. Immunol. 2018 Aug; (): e13029.
Carnathan D, Lawson B, Yu J, Patel K, Billingsley JM, Tharp GK,
Delmas OM, Dawoud R, Wilkinson P, Nicolette C, Cameron MJ, Sekaly RP,
Bosinger SE, Silvestri G, Vanderford TH
Reduced chronic lymphocyte activation following Interferon-α blockade in the acute phase of
SIV infection in rhesus macaques.
J. Virol. 2018 Feb; (): .
Chen S, Bastarrachea RA, Shen JS, Laviada-Nagel A, Rodriguez-Ayala
E, Nava-Gonzalez EJ, Huang P, DeFronzo RA, Kent JW, Grayburn PA
Ectopic
BAT mUCP-1 overexpression in SKM by delivering a BMP7/PRDM16/PGC-1a
gene cocktail or single PRMD16 using non-viral UTMD gene therapy.
Gene Ther. 2018 Aug; (): .
Day GQ, Ng J, Oldt RF, Houghton PW, Smith DG, Kanthaswamy S
DNA-based Determination of Ancestry in
Cynomolgus Macaques (Macaca fascicularis).
Journal of the American Association for
Laboratory Animal Science : JAALAS 2018 Sep; 57(5): 432-442.
Dudley DM, Van Rompay KK, Coffey LL, Ardeshir A, Keesler RI,
Bliss-Moreau E, Grigsby PL, Steinbach RJ, Hirsch AJ, MacAllister RP,
Pecoraro HL, Colgin LM, Hodge T, Streblow DN, Tardif S, Patterson JL,
Tamhankar M, Seferovic M, Aagaard KM, Martín CS, Chiu CY, Panganiban AT,
Veazey RS, Wang X, Maness NJ, Gilbert MH, Bohm RP, Adams Waldorf KM,
Gale M, Rajagopal L, Hotchkiss CE, Mohr EL, Capuano SV, Simmons HA,
Mejia A, Friedrich TC, Golos TG, O'Connor DH
Miscarriage and stillbirth following maternal Zika virus infection in nonhuman
primates.
Nat. Med. 2018 Jul; (): .
Ellis-Connell AL, Balgeman AJ, Zarbock KR, Barry G, Weiler A, Egan
JO, Jeng EK, Friedrich T, Miller JS, Haase AT, Schacker TW, Wong HC,
Rakasz E, O'Connor SL
ALT-803
Transiently Reduces Simian Immunodeficiency Virus Replication in the Absence of Antiretroviral
Treatment.
J. Virol. 2018 Feb; 92(3): .
Ellis-Connell AL, Kannal NM, Balgeman AJ, O'Connor SL
Characterization of major
histocompatibility complex-related molecule 1 sequence variants in non-human
primates.
Immunogenetics 2018 Oct; (): .
Havenar-Daughton C, Sarkar A, Kulp DW, Toy L, Hu X, Deresa
I, Kalyuzhniy O, Kaushik K, Upadhyay AA, Menis S, Landais E, Cao
L, Diedrich JK, Kumar S, Schiffner T, Reiss SM, Seumois G, Yates
JR, Paulson JC, Bosinger SE, Wilson IA, Schief WR, Crotty S
The human naive B cell repertoire contains
distinct subclasses for a germline-targeting HIV-1 vaccine immunogen.
Science translational
medicine 2018 Jul; 10(448): .
Huot N, Bosinger SE, Paiardini M, Reeves RK, Müller-Trutwin M
Lymph Node Cellular and Viral Dynamics in
Natural Hosts and Impact for HIV Cure Strategies.
Frontiers in immunology 2018 05; 9(): 780.
Joas S, Parrish EH, Gnanadurai CW, Lump E, Stürzel CM, Parrish NF,
Learn GH, Sauermann U, Neumann B, Rensing KM, Fuchs D, Billingsley JM,
Bosinger SE, Silvestri G, Apetrei C, Huot N, Garcia-Tellez T,
Müller-Trutwin M, Hotter D, Sauter D, Stahl-Hennig C, Hahn BH, Kirchhoff
F
Species-specific host factors
rather than virus-intrinsic virulence determine primate lentiviral pathogenicity.
Nat Commun 2018
Apr; 9(1): 1371.
Joganic JL, Willmore KE, Richtsmeier JT, Weiss KM, Mahaney MC, Rogers J, Cheverud JM
Additive genetic variation in the
craniofacial skeleton of baboons (genus Papio) and its relationship to body and cranial size.
Am.
J. Phys. Anthropol. 2018 Feb; 165(2): 269-285.
Kanthaswamy S, Bales KL
Evaluating
the genetic status of a closed colony of titi monkeys (Callicebus cupreus) using multigenerational
pedigrees.
J. Med. Primatol. 2018 Feb; (): .
Kanthaswamy S, Ng J, Oldt RF, Phillippi-Falkenstein K, Kubisch HM
SNP-based
genetic characterization of the Tulane National Primate Research
Center's conventional and specific pathogen-free rhesus macaque (Macaca
mulatta) populations.
J. Med. Primatol. 2018 Feb; 47(1): 29-34.
Kanthaswamy S, Oldt RF, Ng J, Smith DG, Martínez MI, Sariol CA
Determination
of major histocompatibility class I and class II genetic composition of
the Caribbean Primate Center specific pathogen-free rhesus macaque
(Macaca mulatta) colony based on massively parallel sequencing.
J. Med. Primatol. 2018 Jul; (): .
Kumar NA, McBrien JB, Carnathan DG, Mavigner M, Mattingly C,
White ER, Viviano F, Bosinger SE, Chahroudi A, Silvestri G,
Chahroudi A, Silvestri G, Paiardini M, Vanderford TH
Antibody-Mediated CD4 Depletion Induces
Homeostatic CD4+
T Cell Proliferation without Detectable Virus Reactivation in
Antiretroviral Therapy-Treated Simian Immunodeficiency Virus-Infected
Macaques.
Journal of virology 2018 Nov; 92(22): .
Magnani DM, Rogers TF, Maness NJ, Grubaugh ND, Beutler N, Bailey
VK, Gonzalez-Nieto L, Gutman MJ, Pedreño-Lopez N, Kwal JM, Ricciardi MJ,
Myers TA, Julander JG, Bohm RP, Gilbert MH, Schiro F, Aye PP, Blair RV,
Martins MA, Falkenstein KP, Kaur A, Curry CL, Kallas EG, Desrosiers RC,
Goldschmidt-Clermont PJ, Whitehead SS, Andersen KG, Bonaldo MC, Lackner
AA, Panganiban AT, Burton DR, Watkins DI
Fetal demise and failed antibody therapy during Zika virus infection of pregnant
macaques.
Nat Commun 2018 Apr; 9(1): 1624.
Mandal P, Feng Y, Lyons JD, Berger SB, Otani S, DeLaney A, Tharp
GK, Maner-Smith K, Burd EM, Schaeffer M, Hoffman S, Capriotti C, Roback
L, Young CB, Liang Z, Ortlund EA, DiPaolo NC, Bosinger S, Bertin J,
Gough PJ, Brodsky IE, Coopersmith CM, Shayakhmetov DM, Mocarski ES
Caspase-8 Collaborates with Caspase-11 to
Drive Tissue Damage and Execution of Endotoxic Shock.
Immunity 2018 Jul; 49(1): 42-55.e6.
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A Multicomponent Animal Virus Isolated from
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Architecture and Its Regional Evolution in Primates.
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potential of two simian hemorrhagic fever viruses in a wild primate population.
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J, Zhao H, Wang Y, Fang X, Zhang G, Wang J, Zhang X, Schierup MH, Du H,
Wang J, Wang X.
An effort to use
human-based exome capture methods to analyze chimpanzee and macaque exomes.
PLoS ONE 2012 07;
7(7): e40637.
Johnson ZP, Eady RD, Ahmad SF, Agravat S, Morris T, Else J, Lank SM, Wiseman RW, O'Connor DH, Penedo MC, Larsen
CP, Kean LS.
Immunogenetic
Management Software: a new tool for visualization and analysis of complex immunogenetic
datasets.
Immunogenetics 2012 Apr; 64(4): 329-36.
Jones DC, Ruzzo WL, Peng X, Katze MG.
A new approach to bias correction in RNA-Seq.
Bioinformatics 2012 Apr; 28(7):
921-8.
Jones DC, Ruzzo WL, Peng X, Katze MG.
Compression of next-generation sequencing reads aided by highly efficient de novo
assembly.
Nucleic Acids Res. 2012 Dec; 40(22): e171.
Kanthaswamy S, Ng J, Penedo MC, Ward T, Smith DG, Ha JC.
Population
genetics of the Washington National Primate Research Center's (WaNPRC)
captive pigtailed macaque (Macaca nemestrina) population.
Am. J. Primatol. 2012 Nov; 74(11):
1017-27.
Karere GM, Glenn JP, VandeBerg JL, Cox LA.
Differential microRNA response to a high-cholesterol, high-fat diet in livers of low and high
LDL-C baboons.
BMC Genomics 2012 Jul; 13(): 320.
Kubisch HM, Falkenstein KP, Deroche CB, Franke DE.
Reproductive efficiency of captive Chinese- and Indian-origin rhesus macaque (Macaca mulatta)
females.
Am. J. Primatol. 2012 Feb; 74(2): 174-84.
Lank SM, Golbach BA, Creager HM, Wiseman RW, Keskin DB, Reinherz EL, Brusic V, O'Connor DH.
Ultra-high resolution HLA genotyping and
allele discovery by highly multiplexed cDNA amplicon pyrosequencing.
BMC Genomics 2012 Aug; 13():
378.
Lomniczi A, Garcia-Rudaz C, Ramakrishnan R, Wilmot B, Khouangsathiene S, Ferguson B, Dissen GA, Ojeda
SR.
A single-nucleotide
polymorphism in the EAP1 gene is associated with amenorrhea/oligomenorrhea in nonhuman
primates.
Endocrinology 2012 Jan; 153(1): 339-49.
Mao P, Gallagher P, Nedungadi S, Manczak M, Shirendeb UP, Kohama SG, Ferguson B, Park BS, Reddy PH.
Mitochondrial DNA deletions and
differential mitochondrial DNA content in Rhesus monkeys: implications for aging.
Biochim.
Biophys. Acta 2012 Feb; 1822(2): 111-9.
Mir KD, Bosinger SE, Gasper M, Ho O, Else JG, Brenchley JM, Kelvin DJ, Silvestri G, Hu SL, Sodora DL.
Simian
immunodeficiency virus-induced alterations in monocyte production of
tumor necrosis factor alpha contribute to reduced immune activation in
sooty mangabeys.
J. Virol. 2012 Jul; 86(14): 7605-15.
Mubiru JN, Cavazos N, Hemmat P, Garcia-Forey M, Shade RE, Rogers J.
Androgen receptor CAG repeat polymorphism
in males of six non-human primate species.
J. Med. Primatol. 2012 Feb; 41(1): 67-70.
Mubiru JN, Garcia-Forey M, Cavazos N, Hemmat P, Dick EJ, Owston MA, Bauer CA, Shade RE, Rogers J.
Serum prostate specific antigen changes in
cynomolgus monkeys (Macaca fascicularis) on a high sugar high fat diet.
Prostate 2012 Apr; 72(5):
469-75.
Mudd PA, Ericsen AJ, Burwitz BJ, Wilson NA, O'Connor DH, Hughes AL, Watkins DI.
Escape from CD8(+) T cell responses in
Mamu-B*00801(+) macaques differentiates progressors from elite controllers.
J. Immunol. 2012 Apr;
188(7): 3364-70.
Mudd PA, Martins MA, Ericsen AJ, Tully DC, Power KA, Bean AT,
Piaskowski SM, Duan L, Seese A, Gladden AD, Weisgrau KL, Furlott JR, Kim
YI, Veloso de Santana MG, Rakasz E, Capuano S, Wilson NA, Bonaldo MC,
Galler R, Allison DB, Piatak M, Haase AT, Lifson JD, Allen TM, Watkins
DI.
Vaccine-induced CD8+ T cells
control AIDS virus replication.
Nature 2012 Nov; 491(7422): 129-33.
Northcott CA, Glenn JP, Shade RE, Kammerer CM, Hinojosa-Laborde C, Fink GD, Haywood JR, Cox LA.
A custom rat and baboon hypertension gene
array to compare experimental models.
Exp. Biol. Med. (Maywood) 2012 Jan; 237(1): 99-110.
O'Connor SL, Becker EA, Weinfurter JT, Chin EN, Budde ML, Gostick
E, Correll M, Gleicher M, Hughes AL, Price DA, Friedrich TC, O'Connor
DH.
Conditional CD8+ T cell escape
during acute simian immunodeficiency virus infection.
J. Virol. 2012 Jan; 86(1): 605-9.
Phillips KA, Rogers J, Barrett EA, Glahn DC, Kochunov P.
Genetic contributions to the midsagittal
area of the corpus callosum.
Twin Res Hum Genet 2012 Jun; 15(3): 315-23.
Premasuthan A, Ng J, Kanthaswamy S, Trask JS, Houghton P, Farkas T, Sestak K, Smith DG.
Molecular ABO phenotyping in cynomolgus
macaques using real-time quantitative PCR.
Tissue Antigens 2012 Oct; 80(4): 363-7.
Rogers J, Raveendran M, Fawcett GL, Fox AS, Shelton SE, Oler JA, Cheverud J, Muzny DM, Gibbs RA, Davidson RJ,
Kalin NH.
CRHR1 genotypes, neural circuits and the diathesis for anxiety and depression.
Mol
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Rout N, Greene J, Yue S, O'Connor D, Johnson RP, Else JG, Exley MA, Kaur A.
Loss
of effector and anti-inflammatory natural killer T lymphocyte function
in pathogenic simian immunodeficiency virus infection.
PLoS Pathog. 2012 Sep; 8(9): e1002928.
Shi Q, Cox LA, Hodara V, Wang XL, VandeBerg JL.
Repertoire of endothelial progenitor cells mobilized by femoral artery ligation: a nonhuman
primate study.
J. Cell. Mol. Med. 2012 Sep; 16(9): 2060-73.
Sweeney CG, Curran E, Westmoreland SV, Mansfield KG, Vallender EJ.
Quantitative molecular assessment of
chimerism across tissues in marmosets and tamarins.
BMC Genomics 2012 Mar; 13(): 98.
Sweeney C, Ward J, Vallender EJ.
Naturally occurring, physiologically normal, primate chimeras.
Chimerism ; 3(2):
43-4.
Taaffe JE, Bosinger SE, Del Prete GQ, Else JG, Ratcliffe S, Ward CD, Migone T, Paiardini M, Silvestri
G.
CCR5
blockade is well tolerated and induces changes in the tissue
distribution of CCR5+ and CD25+ T cells in healthy, SIV-uninfected
rhesus macaques.
J. Med. Primatol. 2012 Feb; 41(1): 24-42.
Vallender EJ.
Genetic correlates of
the evolving primate brain.
Prog. Brain Res. 2012 ; 195(): 27-44.
Vanderford TH, Slichter C, Rogers KA, Lawson BO, Obaede R, Else J, Villinger F, Bosinger SE, Silvestri
G.
Treatment
of SIV-infected sooty mangabeys with a type-I IFN agonist results in
decreased virus replication without inducing hyperimmune activation.
Blood 2012 Jun; 119(24):
5750-7.
Ward JM, Vallender EJ.
The
resurgence and genetic implications of New World primates in biomedical research.
Trends Genet.
2012 Dec; 28(12): 586-91.
Yuan Q, Zhou Z, Lindell SG, Higley JD, Ferguson B, Thompson RC,
Lopez JF, Suomi SJ, Baghal B, Baker M, Mash DC, Barr CS, Goldman D.
The rhesus macaque is three times as
diverse but more closely equivalent in damaging coding variation as compared to the human.
BMC
Genet. 2012 Jun; 13(): 52.
2011
Antonow-Schlorke I, Schwab M, Cox LA, Li C, Stuchlik K, Witte OW, Nathanielsz PW, McDonald TJ.
Vulnerability of the fetal primate brain to
moderate reduction in maternal global nutrient availability.
Proc. Natl. Acad. Sci. U.S.A. 2011
Feb; 108(7): 3011-6.
Barr A, Premasuthan A, Satkoski J, Smith DG, George D, Kanthaswamy S.
A
rapid quantitative real-time PCR-based DNA quantification assay coupled
with species--assignment capabilities for two hybridizing Macaca
species.
Folia Primatol. 2011 10; 82(2): 71-80.
Belisle SE, Yin J, Shedlock DJ, Dai A, Yan J, Hirao L, Kutzler MA,
Lewis MG, Andersen H, Lank SM, Karl JA, O'Connor DH, Khan A, Sardesai
N, Chang J, Aicher L, Palermo RE, Weiner DB, Katze MG, Boyer J.
Long-term
programming of antigen-specific immunity from gene expression
signatures in the PBMC of rhesus macaques immunized with an SIV DNA
vaccine.
PLoS ONE 2011 06; 6(6): e19681.
Bosinger SE, Sodora DL, Silvestri G.
Generalized immune activation and innate immune responses in simian immunodeficiency virus
infection.
Curr Opin HIV AIDS 2011 Sep; 6(5): 411-8.
Budde ML, Lhost JJ, Burwitz BJ, Becker EA, Burns CM, O'Connor SL,
Karl JA, Wiseman RW, Bimber BN, Zhang GL, Hildebrand W, Brusic V,
O'Connor DH.
Transcriptionally
abundant major histocompatibility complex class I alleles are
fundamental to nonhuman primate simian immunodeficiency virus-specific
CD8+ T cell responses.
J. Virol. 2011 Apr; 85(7): 3250-61.
Burwitz BJ, Ende Z, Sudolcan B, Reynolds MR, Greene JM, Bimber BN,
Almeida JR, Kurniawan M, Venturi V, Gostick E, Wiseman RW, Douek DC,
Price DA, O'Connor DH.
Simian
immunodeficiency virus SIVmac239Deltanef vaccination elicits different
Tat28-35SL8-specific CD8+ T-cell clonotypes compared to a DNA
prime/adenovirus type 5 boost regimen in rhesus macaques.
J. Virol. 2011 Apr; 85(7): 3683-9.
Burwitz BJ, Sacha JB, Reed JS, Newman LP, Norante FA, Bimber BN, Wilson NA, Watkins DI, O'Connor DH.
Pyrosequencing
reveals restricted patterns of CD8+ T cell escape-associated
compensatory mutations in simian immunodeficiency virus.
J. Virol. 2011 Dec; 85(24): 13088-96.
Chang ST, Sova P, Peng X, Weiss J, Law GL, Palermo RE, Katze MG.
Next-generation
sequencing reveals HIV-1-mediated suppression of T cell activation and
RNA processing and regulation of noncoding RNA expression in a CD4+ T
cell line.
MBio 2011 09; 2(5): .
Colantonio AD, Bimber BN, Neidermyer WJ, Reeves RK, Alter G, Altfeld M, Johnson RP, Carrington M, O'Connor DH,
Evans DT.
KIR polymorphisms
modulate peptide-dependent binding to an MHC class I ligand with a Bw6 motif.
PLoS Pathog. 2011
Mar; 7(3): e1001316.
Creager HM, Becker EA, Sandman KK, Karl JA, Lank SM, Bimber BN, Wiseman RW, Hughes AL, O'Connor SL, O'Connor
DH.
Characterization of
full-length MHC class II sequences in Indonesian and Vietnamese cynomolgus
macaques.
Immunogenetics 2011 Sep; 63(9): 611-8.
Dietrich EA, Brennan G, Ferguson B, Wiseman RW, O'Connor D, Hu SL.
Variable prevalence and functional
diversity of the antiretroviral restriction factor TRIMCyp in Macaca fascicularis.
J. Virol. 2011
Oct; 85(19): 9956-63.
Fawcett GL, Raveendran M, Deiros DR, Chen D, Yu F, Harris RA, Ren
Y, Muzny DM, Reid JG, Wheeler DA, Worley KC, Shelton SE, Kalin NH,
Milosavljevic A, Gibbs R, Rogers J.
Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca
mulatta).
BMC Genomics 2011 Jun; 12(): 311.
Gokcumen O, Babb PL, Iskow RC, Zhu Q, Shi X, Mills RE, Ionita-Laza I, Vallender EJ, Clark AG, Johnson WE, Lee
C.
Refinement of primate copy
number variation hotspots identifies candidate genomic regions evolving under positive
selection.
Genome Biol. 2011 10; 12(5): R52.
Greene JM, Wiseman RW, Lank SM, Bimber BN, Karl JA, Burwitz BJ,
Lhost JJ, Hawkins OE, Kunstman KJ, Broman KW, Wolinsky SM, Hildebrand
WH, O'Connor DH.
Differential MHC
class I expression in distinct leukocyte subsets.
BMC Immunol. 2011 Jul; 12(): 39.
Holmes RS, Cox LA.
Comparative
Structures and Evolution of Vertebrate Carboxyl Ester Lipase (CEL)
Genes and Proteins with a Major Role in Reverse Cholesterol Transport.
Cholesterol 2011 12;
2011(): 781643.
Holmes RS, Vandeberg JL, Cox LA.
Vertebrate endothelial lipase: comparative studies of an ancient gene and protein in
vertebrate evolution.
Genetica 2011 Mar; 139(3): 291-304.
Holmes RS, Vandeberg JL, Cox LA.
Comparative studies of vertebrate lipoprotein lipase: a key enzyme of very low density
lipoprotein metabolism.
Comp. Biochem. Physiol. Part D Genomics Proteomics 2011 Jun; 6(2):
224-34.
Holmes RS, Vandeberg JL, Cox LA.
Vertebrate hepatic lipase genes and proteins: a review supported by bioinformatic
studies.
Open Access Bioinformatics 2011 Apr; 2011(3): 85-95.
Holmes RS, Vandeberg JL, Cox LA.
Genomics and proteomics of vertebrate cholesterol ester lipase (LIPA) and cholesterol
25-hydroxylase (CH25H).
3 Biotech 2011 Sep; 1(2): 99-109.
Kamat A, Nijland MJ, McDonald TJ, Cox LA, Nathanielsz PW, Li C.
Moderate
global reduction in maternal nutrition has differential stage of
gestation specific effects on {beta}1- and {beta}2-adrenergic receptors
in the fetal baboon liver.
Reprod Sci 2011 Apr; 18(4): 398-405.
Kanthaswamy S, Clarke PM, Kou A, Malladi V, Trask JS, Smith DG.
Association
between hybrid status and reproductive success of captive male and
female rhesus macaques (Macaca mulatta) at the California National
Primate Research Center (CNPRC).
Am. J. Primatol. 2011 Jul; 73(7): 671-8.
Kwa S, Kannanganat S, Nigam P, Siddiqui M, Shetty RD, Armstrong W, Ansari A, Bosinger SE, Silvestri G, Amara
RR.
Plasmacytoid
dendritic cells are recruited to the colorectum and contribute to
immune activation during pathogenic SIV infection in rhesus macaques.
Blood 2011 Sep; 118(10):
2763-73.
Lauck M, Hyeroba D, Tumukunde A, Weny G, Lank SM, Chapman CA, O'Connor DH, Friedrich TC, Goldberg TL.
Novel, divergent simian hemorrhagic fever
viruses in a wild Ugandan red colobus monkey discovered using direct pyrosequencing.
PLoS ONE
2011 Apr; 6(4): e19056.
Malhi RS, Trask JS, Shattuck M, Johnson J, Chakraborty D, Kanthaswamy S, Ramakrishnan U, Smith DG.
Genotyping single nucleotide polymorphisms
(SNPs) across species in Old World Monkeys.
Am. J. Primatol. 2011 Oct; 73(10): 1031-40.
Malhotra R, Hu L, Song W, Brill I, Mulenga J, Allen S, Hunter E, Shrestha S, Tang J, Kaslow RA.
Association of chemokine receptor gene
(CCR2-CCR5) haplotypes with acquisition and control of HIV-1 infection in Zambians.
Retrovirology
2011 Mar; 8(): 22.
Miley DD, Baumgartner MH, Cheverud JM, Roseman CC, Rogers J, McLeod DE, Reyes E, Hildebolt CF.
Heritability of alveolar bone loss from
periodontal disease in a baboon population: a pilot study.
J. Periodontol. 2011 Apr; 82(4):
575-80.
Moreland AJ, Guethlein LA, Reeves RK, Broman KW, Johnson RP, Parham P, O'Connor DH, Bimber BN.
Characterization
of killer immunoglobulin-like receptor genetics and comprehensive
genotyping by pyrosequencing in rhesus macaques.
BMC Genomics 2011 Jun; 12(): 295.
Mubiru JN, Garcia-Forey M, Higgins PB, Hemmat P, Cavazos NE, Dick EJ, Owston MA, Bauer CA, Shade RE, Comuzzie AG,
Rogers J.
A preliminary report on
the feeding of cynomolgus monkeys (Macaca fascicularis) with a high-sugar high-fat diet for 33
weeks.
J. Med. Primatol. 2011 Oct; 40(5): 335-41.
Mudd PA, Ericsen AJ, Walsh AD, León EJ, Wilson NA, Maness NJ, Friedrich TC, Watkins DI.
CD8+
T cell escape mutations in simian immunodeficiency virus SIVmac239
cause fitness defects in vivo, and many revert after transmission.
J. Virol. 2011 Dec; 85(23):
12804-10.
Paiardini M, Cervasi B, Reyes-Aviles E, Micci L, Ortiz AM,
Chahroudi A, Vinton C, Gordon SN, Bosinger SE, Francella N, Hallberg PL,
Cramer E, Schlub T, Chan ML, Riddick NE, Collman RG, Apetrei C, Pandrea
I, Else J, Munch J, Kirchhoff F, Davenport MP, Brenchley JM, Silvestri
G.
Low levels of SIV infection in
sooty mangabey central memory CD⁴⁺ T cells are associated with limited CCR5 expression.
Nat. Med.
2011 Jun; 17(7): 830-6.
Patterson LJ, Daltabuit-Test M, Xiao P, Zhao J, Hu W, Wille-Reece
U, Brocca-Cofano E, Kalyanaraman VS, Kalisz I, Whitney S, Lee EM, Pal R,
Montefiori DC, Dandekar S, Seder R, Roederer M, Wiseman RW, Hirsch V,
Robert-Guroff M.
Rapid
SIV Env-specific mucosal and serum antibody induction augments cellular
immunity in protecting immunized, elite-controller macaques against
high dose heterologous SIV challenge.
Virology 2011 Mar; 411(1): 87-102.
Peng X, Gralinski L, Ferris MT, Frieman MB, Thomas MJ, Proll S,
Korth MJ, Tisoncik JR, Heise M, Luo S, Schroth GP, Tumpey TM, Li C,
Kawaoka Y, Baric RS, Katze MG.
Integrative
deep sequencing of the mouse lung transcriptome reveals differential
expression of diverse classes of small RNAs in response to respiratory
virus infection.
MBio 2011 11; 2(6): .
Premasuthan A, Kanthaswamy S, Satkoski J, Smith DG.
A simple multiplex polymerase chain
reaction to determine ABO blood types of rhesus macaques (Macaca mulatta).
Tissue Antigens 2011
Jun; 77(6): 584-8.
Rotger M, Dalmau J, Rauch A, McLaren P, Bosinger SE, Martinez R,
Sandler NG, Roque A, Liebner J, Battegay M, Bernasconi E, Descombes P,
Erkizia I, Fellay J, Hirschel B, Miró JM, Palou E, Hoffmann M,
Massanella M, Blanco J, Woods M, Günthard HF, de Bakker P, Douek DC,
Silvestri G, Martinez-Picado J, Telenti A.
Comparative
transcriptomics of extreme phenotypes of human HIV-1 infection and SIV
infection in sooty mangabey and rhesus macaque.
J. Clin. Invest. 2011 Jun; 121(6): 2391-400.
Song W, He D, Brill I, Malhotra R, Mulenga J, Allen S, Hunter E, Tang J, Kaslow RA.
Disparate associations of HLA class I
markers with HIV-1 acquisition and control of viremia in an African population.
PLoS ONE 2011 08;
6(8): e23469.
Szabó CA, Kochunov P, Knape KD, McCoy KJ, Leland MM, Lancaster JL, Fox PT, Williams JT, Rogers J.
Cortical sulcal areas in baboons (Papio
hamadryas spp.) with generalized interictal epileptic discharges on scalp EEG.
Epilepsy Res. 2011
Feb; 93(2-3): 91-5.
Trask JS, Garnica WT, Kanthaswamy S, Malhi RS, Smith DG.
4040 SNPs for genomic analysis in the
rhesus macaque (Macaca mulatta).
Genomics 2011 Nov; 98(5): 352-8.
Trask JS, Garnica WT, Malhi RS, Kanthaswamy S, Smith DG.
High-throughput
single-nucleotide polymorphism discovery and the search for candidate
genes for long-term SIVmac nonprogression in Chinese rhesus macaques
(Macaca mulatta).
J. Med. Primatol. 2011 Aug; 40(4): 224-32.
Vallender EJ.
Expanding whole exome
resequencing into non-human primates.
Genome Biol. 2011 Sep; 12(9): R87.
Vinson A, Curran JE, Johnson MP, Dyer TD, Moses EK, Blangero J, Cox LA, Rogers J, Havill LM, Vandeberg JL, Mahaney
MC.
Genetical genomics of Th1 and
Th2 immune response in a baboon model of atherosclerosis risk factors.
Atherosclerosis 2011 Aug;
217(2): 387-94.
Vojnov L, Martins MA, Almeida JR, Ende Z, Rakasz EG, Reynolds MR,
Leon EJ, Weisgrau KL, Burwitz BJ, Folkvord JM, de Santana MG, Neves PC,
Connick E, Skinner PJ, Gostick E, O'Connor DH, Wilson NA, Bonaldo MC,
Galler R, Price DA, Douek DC, Watkins DI.
GagCM9-specific CD8+ T cells expressing limited public TCR clonotypes do not suppress SIV
replication in vivo.
PLoS ONE 2011 09; 6(8): e23515.
Waleh N, McCurnin DC, Yoder BA, Shaul PW, Clyman RI.
Patent ductus arteriosus ligation alters
pulmonary gene expression in preterm baboons.
Pediatr. Res. 2011 Mar; 69(3): 212-6.
Westmoreland SV, Annamalai L, Lentz MR, Ratai EM, Assaf B, Boisvert K, Huynh T, Vallender EJ, Miller GM, Madras
BK, Gonzalez RG.
Growth-associated
protein-43 and ephrin B3 induction in the brain of adult SIV-infected rhesus macaques.
J.
Neurovirol. 2011 Oct; 17(5): 455-68.
2010
Larsen CP, Page A, Linzie KH, Russell M, Deane T, Stempora L,
Strobert E, Penedo MC, Ward T, Wiseman R, O'Connor D, Miller W, Sen S,
Singh K, Kean LS.
An
MHC-defined primate model reveals significant rejection of bone marrow
after mixed chimerism induction despite full MHC matching.
Am. J. Transplant. 2010 Nov; 10(11):
2396-409.
Oler JA, Fox AS, Shelton SE, Rogers J, Dyer TD, Davidson RJ, Shelledy W, Oakes TR, Blangero J, Kalin
NH.
Amygdalar and hippocampal
substrates of anxious temperament differ in their heritability.
Nature 2010 Aug; 466(7308):
864-8.
Vallender EJ.
Comparative genetic
approaches to the evolution of human brain and behavior.
Am. J. Hum. Biol. 2010 12; 23(1): 53-64.
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